PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG025024.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family E2F/DP
Protein Properties Length: 551aa    MW: 61310.7 Da    PI: 4.8072
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG025024.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP85.73.4e-27151216171
      E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                  r+++sL+llt+kf++l++++e+gi++ln++a++L   +v  ++RRiYDi+NVLe+++liekk kn+i+wkg
  CCG025024.1 151 RYDSSLGLLTKKFINLIKHAEDGILDLNKAAETL---EV--QKRRIYDITNVLEGIGLIEKKLKNRIQWKG 216
                  6899******************************...99..****************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.8E-29147218IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.35E-17151214IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.3E-34151216IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023192.5E-24153216IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146604.15E-47228334No hitNo description
SuperFamilySSF1440742.48E-33230334No hitNo description
PfamPF164212.2E-33233332IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0010090Biological Processtrichome morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051302Biological Processregulation of cell division
GO:0051446Biological Processpositive regulation of meiotic cell cycle
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    Send to blast
MSNSQAQNNQ SMKQPQQSSM QSHAPNQRQH QQPLSFSSMK PPFLPPGDYH RFGDEQRRAV  60
SDHEVEGIVV KPPTLKRKSD AADHQGESSE WNAGHGYMEV VTSPLQTPVS GKGGKTPKTS  120
RLSKSSKSGS QSAAAALGSP GNNLTPSGPC RYDSSLGLLT KKFINLIKHA EDGILDLNKA  180
AETLEVQKRR IYDITNVLEG IGLIEKKLKN RIQWKGLDVS RPGEADDNNV ATLQAEVENL  240
TMEERRLDEQ TREMQERLRD LSEDENNQKW LFVTEEDIKS LPGFQNETLI AIKAPHGTTL  300
EVPDPDEAVD YPQRRYRIVL RSTMGPIDVY LVSQFEEKIE DIQGVEPPPS YPSTSGFNEN  360
PAITMTMEES RGKEVEMQEQ DGHRMCSELN TAHDFVSGIM KIVPSDVDSD ADYWLLSDAG  420
VSITDMWRNE PAVEWNDLDT LPNDYVMPNV CPPQPQTPPS NPTEVPPEPM ATTLCLYRCD  480
ILEVRSRVPA SYHSSKETKA CRGIGYLLES SPSPEWIGCS RNAVVIVEFH CSVVIMTPGT  540
LVIALVATQR T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A4e-25146217274PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1795060.0AY179506.1 Populus alba E2F mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011006724.10.0PREDICTED: transcription factor E2FB isoform X1
SwissprotQ9FV711e-172E2FB_ARATH; Transcription factor E2FB
TrEMBLU5GK730.0U5GK73_POPTR; E2F transcription factor-1 family protein
STRINGPOPTR_0004s21100.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19473490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22220.21e-160E2F transcription factor 1